PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G159800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 291aa    MW: 32546 Da    PI: 6.6466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G159800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-10203246755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ ++RR+ri +++  L+el+P+ +      K++ +++LekA+ Y+k Lq
  Prupe.3G159800.1.p 203 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAISYVKFLQ 246
                         5679*******************77......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-13195255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11197253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-11202250No hitNo description
SMARTSM003533.2E-11202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7204246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALAKDMRMP HDSCTHESPQ VSSDLSNGFV FRATSNYHQP DHQVAHSVIN FKNSGYNSFF  60
QNSESLLSFE KNSKQNILKT RNDKDEHFNC EDDLHHGNYQ WNHTASVSDP RLSGDFNCFQ  120
TASNYSSMPN TSEDDHGDEA YGWLYSEATV VADGFQEPES QEGFHKRPHA GEAMQPLKKQ  180
CTNSGTKKPK PKSSSPTKDP QSIAAKNRRE RISERLKILQ ELVPNGCKVD LVTMLEKAIS  240
YVKFLQLQVK VLATDEFWPV QGGKAPDISQ VKEAIDAILS SQRDTSSSSK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229223.10.0PREDICTED: putative transcription factor bHLH086
SwissprotQ9C7072e-62BH083_ARATH; Transcription factor bHLH83
TrEMBLM5WZF10.0M5WZF1_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_14s0006g01470.t012e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-59RHD SIX-LIKE 1